Nguyen, T.H., He, X., Brown, R.C., Webb, B.T., Kendler, K.S., Vladimirov, V.I., Riley, B.P. and Bacanu, S.A., 2021. DECO: a framework for jointly analyzing de novo and rare case/control variants, and biological pathways. Briefings in Bioinformatics.
Nguyen, T.H., Dobbyn, A., Brown, R.C., Riley, B.P., Buxbaum, J.D., Pinto, D., Purcell, S.M., Sullivan, P.F., He, X. and Stahl, E.A., 2020. mTADA is a framework for identifying risk genes from de novo mutations in multiple traits. Nature Communications, 11(1), pp.1-12.
Huckins, L.M., Chatzinakos, C., Breen, M.S., Hartmann, J., Klengel, T., da Silva Almeida, A.C., Dobbyn, A., Girdhar, K., Hoffman, G.E., Klengel, C., .., Nguyen, H.T. , .. Logue, M.W.,.., 2020. Analysis of Genetically Regulated Gene Expression Identifies a Prefrontal PTSD Gene, SNRNP35, Specific to Military Cohorts. Cell Reports , 31(9), p.107716.
Nguyen, H.T. , Dobbyn, A., Charney, A., Bryois, J., Kim, A., Skene, N.G., Huckins, L.M., Wang, W., Ruderfer, D.M., Xu, X.,.., and Stahl, E.A., 2018. Integrative analysis of rare variants and pathway information shows convergent results between immune pathways, drug targets and epilepsy genes . bioRxiv, p.410100.
Huckins, L.M., Dobbyn, A., Ruderfer, D.M., Hoffman, G., Wang, W., Pardinas, A.F., Rajagopal, V.M., Als, T.D., Nguyen, H.T. , Girdhar, K. et al., 2019. Gene expression imputation across multiple brain regions provides insights into schizophrenia risk . Nature genetics , 51(4), pp.659-674.
Stahl, E.A., Breen, G., Forstner, A.J., McQuillin, A., Ripke, S., Trubetskoy, V., Mattheisen, M., Wang, Y., Coleman, J.R., Gaspar, H.A. and de Leeuw, C.A..., Nguyen , H. . et al., 2019. Genome-wide association study identifies 30 loci associated with bipolar disorder . Nature genetics , 51(5), pp.793-803.
Nguyen, H.T., Bryois, J., Kim, A., Dobbyn, A., Huckins, L.M., Munoz-Manchado, A.B., Ruderfer, D.M., Genovese, G., Fromer, M., Xu, X. et al., 2017. Integrated Bayesian analysis of rare exonic variants to identify risk genes for schizophrenia and neurodevelopmental disorders. Genome Medicine , 9(1), p.114.
Spectrum news: New software mines data for autism risk genes.
Nguyen, M.O., Nguyen, H.T. and Asgari, M.M., 2017. Towards the use of precision medicine in predicting cutaneous squamous cell carcinoma risk among solid organ transplant recipients. The British journal of dermatology, 177(4), p.901.
Nguyen, H.T. , Boocock, J., Merriman, T.R. and Black, M.A., 2016. SRBreak: a read-depth and split-read framework to identify breakpoints of different events inside simple copy-number variable regions. Frontiers in genetics , 7, p.160.
Cadzow, M., Boocock, J., Nguyen, H.T. , Wilcox, P., Merriman, T.R. and Black, M.A., 2014. A bioinformatics workflow for detecting signatures of selection in genomic data. Frontiers in genetics , 5, p.293.
Nguyen, H.T. , Merriman, T.R. and Black, M.A., 2014. The CNVrd2 package: measurement of copy number at complex loci using high-throughput sequencing data. Frontiers in Genetics , 5, p.248.
Nguyen, H.T. , Merriman, T.R. and Black, M.A., 2013. CNVrd, a read-depth algorithm for assigning copy-number at the FCGR locus: population-specific tagging of copy number variation at FCGR3B. PloS one , 8(4).